Get Algorithms in Bioinformatics: 11th International Workshop, PDF

By Broňa Brejová, Michal Burger, Tomáš Vinař (auth.), Teresa M. Przytycka, Marie-France Sagot (eds.)

ISBN-10: 3642230385

ISBN-13: 9783642230387

This ebook constitutes the refereed complaints of the eleventh overseas Workshop on Algorithms in Bioinformatics, WABI 2011, held in Saarbrücken, Germany, in September 2011.
The 30 papers provided have been conscientiously reviewed and chosen from seventy seven submissions. They disguise features of algorithms in bioinformatics, computational biology and platforms biology.

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Additional info for Algorithms in Bioinformatics: 11th International Workshop, WABI 2011, Saarbrücken, Germany, September 5-7, 2011. Proceedings

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Quartets inferred near the root of the search tree tend to have large distances between taxa, whereas quartets inferred in the deeper parts of the search tree are shorter since they only span a small fraction of the overall tree. Using least squares fit Towards a Practical O(n log n) Phylogeny Algorithm 21 of the distances to the quartet topology also did not seem to improve the accuracy of node queries, and using weighted least squares also did not improve the accuracy of quartet inferences. We have tried to find a good starting point for the random walk by using profile search.

Finally, we show that our approach is capable of solving real-world instances to provable optimality within a precise mathematical model, which was not possible with earlier methods. The rest of the paper is organized as follows. We start by formally defining the problem and showing hardness of the problem. In Section 3 we introduce our method and state a MIP formulation. An experimental evaluation on a real-word instance and on randomly generated instances is presented in Section 4. We conclude with a discussion on our results in Section 5.

The combination of linkage values and the calculation of distances between the loci of linked factors. Journal of Genetics 8, 299–309 (1919) 38 S. Canzar and M. El-Kebir 6. : Optimization of the marker-based procedures for pyramiding genes from multiple donor lines: I. Schedule of crossing between the donor lines. Crop Science 47, 537–546 (2007) 7. : Reducibility among combinatorial problems. W. ) Complexity of Computer Computations, pp. 85–103. Plenum Press, New York (1972) 8. : Molecular plant breeding as the foundation for 21st century crop improvement.

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Algorithms in Bioinformatics: 11th International Workshop, WABI 2011, Saarbrücken, Germany, September 5-7, 2011. Proceedings by Broňa Brejová, Michal Burger, Tomáš Vinař (auth.), Teresa M. Przytycka, Marie-France Sagot (eds.)


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